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1

Genome of Xanthomonas oryzae Bacteriophage Xp10: An Odd T-Odd Phage

Julia Yuzenkova, Sergei Nechaev, Jana Berlin, Dragana Rogulja, Konstantin Kuznedelov, Ross Inman, Arcady Mushegian, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.92 MB

english, 2003

2

The Antibacterial Threaded-lasso Peptide Capistruin Inhibits Bacterial RNA Polymerase

Konstantin Kuznedelov, Ekaterina Semenova, Thomas A. Knappe, Damir Mukhamedyarov, Aashish Srivastava, Sujoy Chatterjee, Richard H. Ebright, Mohamed A. Marahiel, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 513 KB

english, 2011

3

The mechanism of DNA replication primer synthesis by RNA polymerase

Zenkin, Nikolay, Naryshkina, Tatyana, Kuznedelov, Konstantin, Severinov, Konstantin

Journal:

Year:

2006

Language:

english

File:

PDF, 220 KB

english, 2006

4

The role of the bacterial RNA polymerase β subunit flexible flap domain in transcription termination

K. D. Kuznedelov, N. V. Komissarova, K. V. Severinov

Journal:

Doklady Biochemistry and Biophysics

Year:

2006

Language:

english

File:

PDF, 192 KB

english, 2006

5

Chromosomes of Phagocata kawakatsui and Bdellocephala annandalei from Lake Biwa-ko in Honshú, central Japan

Iwashiro Oki, Sachiko Tamura, Machiko Nishino, Masayuki Takai, Konstantin D. Kuznedelov, Oleg A. Timoshkin, Masaharu Kawakatsu

Journal:

Year:

1998

Language:

english

File:

PDF, 133 KB

english, 1998

6

A eukaryotic alga from picoplankton of Lake Baikal: morphology, ultrastructure and rDNA sequence data

Olga I. Belykh, Ekaterina A. Semenova, Konstantin D. Kuznedelov, Elena I. Zaika, Nina E. Guselnikova

Journal:

Year:

2000

Language:

english

File:

PDF, 397 KB

english, 2000

7

Nucleotide Sequences of Fragments of 16S rRNA of the Baikal Natural Populations and Laboratory Cultures of Cyanobacteria

E. A. Semenova, K. D. Kuznedelov, M. A. Grachev

Journal:

Molecular Biology

Year:

2001

Language:

english

File:

PDF, 63 KB

english, 2001

8

Structure-based analysis of RNA polymerase function: the largest subunit's rudder contributes critically to elongation complex stability and is not involved in the maintenance of RNA-DNA hybrid length

Journal:

The EMBO Journal

Year:

2002

Language:

english

File:

PDF, 372 KB

english, 2002

9

FrancisellaRNA polymerase contains a heterodimer of non-identical α subunits

Damir Mukhamedyarov, Kira S Makarova, Konstantin Severinov, Konstantin Kuznedelov

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 2.10 MB

english, 2011

10

Recombinant Thermus aquaticus RNA Polymerase for Structural Studies

Konstantin Kuznedelov, Valerie Lamour, Georgia Patikoglou, Mark Chlenov, Seth A. Darst, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 742 KB

english, 2006

11

The Role of the Largest RNA Polymerase Subunit Lid Element in Preventing the Formation of Extended RNA-DNA Hybrid

Tatyana Naryshkina, Konstantin Kuznedelov, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 593 KB

english, 2006

12

Temporal Regulation of Viral Transcription during Development of Thermus thermophilus Bacteriophage ϕYS40

Anastasiya Sevostyanova, Marko Djordjevic, Konstantin Kuznedelov, Tatyana Naryshkina, Mikhail S. Gelfand, Konstantin Severinov, Leonid Minakhin

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 2.01 MB

english, 2007

13

Crystal Structure of Escherichia coli Rnk, a New RNA Polymerase-Interacting Protein

Valerie Lamour, Steven T. Rutherford, Konstantin Kuznedelov, Udupi A. Ramagopal, Richard L. Gourse, Konstantin Severinov, Seth A. Darst

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.38 MB

english, 2008

14

A Basal Promoter Element Recognized by Free RNA Polymerase σ Subunit Determines Promoter Recognition by RNA Polymerase Holoenzyme

Andrey Feklistov, Nataliya Barinova, Anastasiya Sevostyanova, Ewa Heyduk, Irina Bass, Irina Vvedenskaya, Konstantin Kuznedelov, Eglė Merkienė, Elena Stavrovskaya, Saulius Klimašauskas, Vadim Nikiforov

Journal:

Year:

2006

Language:

english

File:

PDF, 611 KB

english, 2006

15

Recombinant bacterial RNA polymerase: Preparation and applications

Konstantin Kuznedelov, Konstantin Severinov

Journal:

Year:

2009

Language:

english

File:

PDF, 696 KB

english, 2009

16

Interaction of T4 AsiA with its Target Sites in the RNA Polymerase σ70 Subunit Leads to Distinct and Opposite Effects on Transcription

Leonid Minakhin, Anita Niedziela-Majka, Konstantin Kuznedelov, Karen Adelman, Jeffrey L Urbauer, Tomasz Heyduk, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.22 MB

english, 2003

17

Rapid Isolation and Identification of Bacteriophage T4-Encoded Modifications of Escherichia coli RNA Polymerase: A Generic Method to Study Bacteriophage/Host Interactions

Westblade, Lars F., Minakhin, Leonid, Kuznedelov, Konstantin, Tackett, Alan J., Chang, Emmanuel J., Mooney, Rachel A., Vvedenskaya, Irina, Wang, Qing Jun, Fenyö, David, Rout, Michael P., Landick, Robe

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 621 KB

english, 2008

18

Chemical Synthesis Enables Biochemical and Antibacterial Evaluation of Streptolydigin Antibiotics

Pronin, Sergey V., Martinez, Anthony, Kuznedelov, Konstantin, Severinov, Konstantin, Shuman, Howard A., Kozmin, Sergey A.

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 2.13 MB

english, 2011

19

A Role for Interaction of the RNA Polymerase Flap Domain with the sigma Subunit in Promoter Recognition

Journal:

Year:

2002

Language:

english

File:

PDF, 402 KB

english, 2002

20

The RimL Transacetylase Provides Resistance to Translation Inhibitor Microcin C

Kazakov, T., Kuznedelov, K., Semenova, E., Mukhamedyarov, D., Datsenko, K. A., Metlitskaya, A., Vondenhoff, G. H., Tikhonov, A., Agarwal, V., Nair, S., Van Aerschot, A., Severinov, K.

Journal:

Journal of Bacteriology

Year:

2014

Language:

english

File:

PDF, 992 KB

english, 2014

21

[Methods in Enzymology] RNA Polymerases and Associated Factors, Part C Volume 370 || Preparation and Characterization of Recombinant Thermus aquaticus RNA Polymerase

Kuznedelov, Konstantin

Year:

2003

Language:

english

File:

PDF, 249 KB

english, 2003

22

CRISPR RNA binding and DNA target recognition by purified Cascade complexes from Escherichia coli

Beloglazova, N., Kuznedelov, K., Flick, R., Datsenko, K. A., Brown, G., Popovic, A., Lemak, S., Semenova, E., Severinov, K., Yakunin, A. F.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.89 MB

english, 2015

23

Synthetic Microcin C Analogs Targeting Different Aminoacyl-tRNA Synthetases

Van de Vijver, P., Vondenhoff, G. H. M., Kazakov, T. S., Semenova, E., Kuznedelov, K., Metlitskaya, A., Van Aerschot, A., Severinov, K.

Journal:

Journal of Bacteriology

Year:

2009

Language:

english

File:

PDF, 1.56 MB

english, 2009

24

A novel phage-encoded transcription antiterminator acts by suppressing bacterial RNA polymerase pausing

Berdygulova, Z., Esyunina, D., Miropolskaya, N., Mukhamedyarov, D., Kuznedelov, K., Nickels, B. E., Severinov, K., Kulbachinskiy, A., Minakhin, L.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 8.08 MB

english, 2012

25

Multiple Roles of the RNA Polymerase Subunit Flap Domain in 54-Dependent Transcription

Wigneshweraraj, S. R., Kuznedelov, K., Severinov, K., Buck, M.

Journal:

Journal of Biological Chemistry

Year:

2003

Language:

english

File:

PDF, 958 KB

english, 2003

26

Genetic Divergence of Japanese Turbellarians, Studied by Comparisons of Partial 18S rRNA Gene Sequences. I. On Representatives of Dendrocoelidae (Platyhelminthes: Tricladida: Paludicola)

Kuznedelov, Konstantin D., Ishida, Sachiko, Nishitani, Shin-ichiro

Journal:

Zoological Science

Year:

2000

Language:

english

File:

PDF, 227 KB

english, 2000

27

Structural Modules of RNA Polymerase Required for Transcription from Promoters Containing Downstream Basal Promoter Element GGGA

Barinova, N., Kuznedelov, K., Severinov, K., Kulbachinskiy, A.

Journal:

Journal of Biological Chemistry

Year:

2008

Language:

english

File:

PDF, 806 KB

english, 2008

28

A Consensus Adenine at Position -11 of the Nontemplate Strand of Bacterial Promoter Is Important for Nucleation of Promoter Melting

Heyduk, E., Kuznedelov, K., Severinov, K., Heyduk, T.

Journal:

Journal of Biological Chemistry

Year:

2006

Language:

english

File:

PDF, 844 KB

english, 2006

29

Analysis of the mechanism of nucleosome survival during transcription

Chang, H.-W., Kulaeva, O. I., Shaytan, A. K., Kibanov, M., Kuznedelov, K., Severinov, K. V., Kirpichnikov, M. P., Clark, D. J., Studitsky, V. M.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 5.14 MB

english, 2014

30

RNA polymerase-promoter interactions determining different stability of the Escherichia coli and Thermus aquaticus transcription initiation complexes

Mekler, V., Minakhin, L., Kuznedelov, K., Mukhamedyarov, D., Severinov, K.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 1.40 MB

english, 2012

31

The Cas6e ribonuclease is not required for interference and adaptation by the E. coli type I-E CRISPR-Cas system

Semenova, Ekaterina, Kuznedelov, Konstantin, Datsenko, Kirill A., Boudry, Pierre M., Savitskaya, Ekaterina E., Medvedeva, Sofia, Beloglazova, Natalia, Logacheva, Maria, Yakunin, Alexander F., Severino

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 2.49 MB

english, 2015

32

Kinetics of the CRISPR-Cas9 effector complex assembly and the role of 3′-terminal segment of guide RNA

Mekler, Vladimir, Minakhin, Leonid, Semenova, Ekaterina, Kuznedelov, Konstantin, Severinov, Konstantin

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.26 MB

english, 2016

33

Altered stoichiometry Escherichia coli Cascade complexes with shortened CRISPR RNA spacers are capable of interference and primed adaptation

Kuznedelov, Konstantin, Mekler, Vladimir, Lemak, Sofia, Tokmina-Lukaszewska, Monika, Datsenko, Kirill A., Jain, Ishita, Savitskaya, Ekaterina, Mallon, John, Shmakov, Sergey, Bothner, Brian, Bailey, Sc

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 4.87 MB

english, 2016

34

Acinetodin and Klebsidin, RNA Polymerase Targeting Lasso Peptides Produced by Human Isolates of Acinetobacter gyllenbergii and Klebsiella pneumoniae

Metelev, Mikhail, Arseniev, Anatolii, Bushin, Leah B., Kuznedelov, Konstantin, Artamonova, Tatiana O., Kondratenko, Ruslan, Khodorkovskii, Mikhail, Seyedsayamdost, Mohammad R., Severinov, Konstantin

Journal:

ACS Chemical Biology

Year:

2017

Language:

english

File:

PDF, 2.31 MB

english, 2017

35

Primed CRISPR adaptation in Escherichia coli cells does not depend on conformational changes in the Cascade effector complex detected in Vitro

Krivoy, Andrey, Rutkauskas, Marius, Kuznedelov, Konstantin, Musharova, Olga, Rouillon, Christophe, Severinov, Konstantin, Seidel, Ralf

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 5.38 MB

english, 2018

36

Duplex DNA Destabilization by Type V CRISPR-Cas Nucleases during Interrogation of DNA

Mekler, Vladimir, Minakhin, Leonid, Kuznedelov, Konstantin, Murugan, Karthik, Sashital, Dipali, Severinov, Konstantin

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 39 KB

english, 2018

37

‘Drc’, a structurally novel ssDNA-binding transcription regulator of N4-related bacterial viruses

Boon, Maarten, De Zitter, Elke, De Smet, Jeroen, Wagemans, Jeroen, Voet, Marleen, Pennemann, Friederike L, Schalck, Thomas, Kuznedelov, Konstantin, Severinov, Konstantin, Van Meervelt, Luc, De Maeyer,

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 4.80 MB

english, 2019

38

‘Drc’, a structurally novel ssDNA-binding transcription regulator of N4-related bacterial viruses

Boon, Maarten, De Zitter, Elke, De Smet, Jeroen, Wagemans, Jeroen, Voet, Marleen, Pennemann, Friederike L, Schalck, Thomas, Kuznedelov, Konstantin, Severinov, Konstantin, Van Meervelt, Luc, De Maeyer,

Journal:

Nucleic Acids Research

Year:

2019

File:

PDF, 4.80 MB

2019

39

Quantification of the affinities of CRISPRâCas9 nucleases for cognate protospacer adjacent motif (PAM) sequences

Mekler, Vladimir, Kuznedelov, Konstantin, Severinov, Konstantin

Journal:

Journal of Biological Chemistry

Year:

2020

File:

PDF, 716 KB

2020